5JB1

Pseudo-atomic structure of Human Papillomavirus Type 59 L1 Virus-like Particle


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

The C-Terminal Arm of the Human Papillomavirus Major Capsid Protein Is Immunogenic and Involved in Virus-Host Interaction.

Li, Z.Yan, X.Yu, H.Wang, D.Song, S.Li, Y.He, M.Hong, Q.Zheng, Q.Zhao, Q.Gu, Y.Zhang, J.Janssen, M.E.Cardone, G.Olson, N.H.Baker, T.S.Li, S.Xia, N.

(2016) Structure 24: 874-885

  • DOI: https://doi.org/10.1016/j.str.2016.04.008
  • Primary Citation of Related Structures:  
    5J6R, 5JB1

  • PubMed Abstract: 

    Cervical cancer is the second most prevalent malignant tumor among women worldwide. High-risk human papillomaviruses (HPVs) are believed to be the major causative pathogens of mucosal epithelial cancers including cervical cancer. The HPV capsid is made up of 360 copies of major (L1) and 72 copies of minor (L2) capsid proteins. To date, limited high-resolution structural information about the HPV capsid has hindered attempts to understand details concerning the mechanisms by which HPV assembles and infects cells. In this study, we have constructed a pseudo-atomic model of the HPV59 L1-only capsid and demonstrate that the C-terminal arm of L1 participates in virus-host interactions. Moreover, when conjugated to a scaffold protein, keyhole limpet hemocyanin (KLH), this arm is immunogenic in vivo. These results provide new insights that will help elucidate HPV biology, and hence pave a way for the design of next-generation HPV vaccines.


  • Organizational Affiliation

    State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, School of Life Sciences, Xiamen University, Xiamen 361102, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein L1
A, B, C, D, E
A, B, C, D, E, F
500human papillomavirus 59Mutation(s): 0 
Gene Names: ORF putative L1L1
UniProt
Find proteins for Q81971 (Human papillomavirus 59)
Explore Q81971 
Go to UniProtKB:  Q81971
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ81971
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTVMD
RECONSTRUCTIONAuto3DEM4.05

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science FoundationChina81172885
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR37-GM33050

Revision History  (Full details and data files)

  • Version 1.0: 2016-05-18
    Type: Initial release
  • Version 1.1: 2016-07-06
    Changes: Database references
  • Version 1.2: 2017-10-18
    Changes: Author supporting evidence, Data collection, Data processing, Database references
  • Version 1.3: 2019-10-23
    Changes: Data collection, Other
  • Version 1.4: 2022-03-23
    Changes: Author supporting evidence, Database references, Derived calculations