Announcement: EDMAPS.rcsb.org Shutdown

05/09 

In fall of 2024, electron density map coefficients will be available in the public PDB archive for all X-ray structures. These map coefficients will be the same as used in wwPDB Validation Reports.

These files will replace the electron density maps and combined map coefficient files distributed by RCSB PDB and used by the NGLviewer at RCSB.org. These data are calculated using publicly-available coordinate files and structure factor files and offered in DSN6 formatted map files and MTZ formatted map coefficient files. RCSB PDB plans to shutdown the NGL viewer by July 2024 and will no longer need these data (announcement).

RCSB PDB will be phasing out EDMAPS.rcsb.org:

• June 28, 2024: DSN6-formatted map files will no longer be provided. EDMAPS.rcsb.org will only serve MTZ files with map coefficients.
• Fall 2024: Electron density map coefficients will be available in the public PDB archive for all X-ray structures. At this point, EDMAPS.rcsb.org will be shut down, including access to MTZ files with map coefficients from this service.

To help users with this transition, RCSB PDB be holding a Virtual Office Hour on Thursday June 13, 2024 from 1:00pm-2:00pm Eastern, 10:00am-11am Pacific. Please register online for this event at https://go.rutgers.edu/psx4pr63.

Register online at https://go.rutgers.edu/psx4pr63

Questions about this transition can be sent to info@rcsb.org.

News Index

• 05/09 Announcement: EDMAPS.rcsb.org Shutdown

• 05/08 wwPDB News: Poster Prize Awarded at DiscoverBMB

• 05/07 wwPDB News: Celia Schiffer Elected to National Academy of Sciences

• 05/05 Video: How Neurons Communicate

• 05/01 Register Now for a Webinar on Understanding PDB Validation: Which experimental structures should I rely on?

• 04/30 Annual Report Published

• 04/30 wwPDB News: Coming soon: Annotation of Protein Modifications in the PDB

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• 04/21 Celebrate DNA Day on April 25

• 04/18 April 22 is Earth Day

• 04/16 Spring Newsletter Published

• 04/14 Paper Published: Folding paper models of biostructures for outreach and education

• 04/09 Register Now for a Webinar on Understanding PDB Validation: Which experimental structures should I rely on?

• 04/08 wwPDB News: CASP16 Call for Targets

• 04/02 Video: Immunology and Cancer

• 04/01 Register Now for a Virtual Deep Dive into Computed Structure Model Exploration at RCSB.org

• 04/01 Paper Published on NMR Restraint Validation

• 03/31 Explore Mechanism and Catalytic Site Annotations

• 03/29 Take the EDMAPS.rcsb.org Survey

• 03/26 Education Corner: Bringing Proteins to Life

• 03/24 Register for the April 1 Mol* Virtual Office Hour

• 03/21 March 24 is World TB Day

• 03/20 Meet RCSB PDB at the #DiscoverBMB Meeting

• 03/17 Paper Published: Visualizing groups of PDB structures and CSMs

• 03/12 wwPDB News: Paper Published on CryoEM Archiving and Validation Recommendations

• 03/11 March 11-17: Brain Awareness Week

• 03/06 wwPDB News: Poster Prize Awarded at The Biophysical Society Meeting

• 02/29 March 4 is International HPV Awareness Day

• 02/27 February 29 is Rare Disease Day

• 02/27 wwPDB News: Latest Developments on the EMDB Published

• 02/25 Register for the March 28 Office Hour to Ask A Biocurator

• 02/23 wwPDB Preprint Published on NMR Restraint Validation

• 02/20 wwPDB Preprint Published on CryoEM Archiving and Validation Recommendations

• 02/16 PDB-101 Focus: Peak Performance

• 02/14 wwPDB Preprint Published on NextGen Archive

• 02/12 Use a Python Package to Access the RCSB PDB Search API

• 02/11 Molecular Valentines

• 02/06 Meet RCSB PDB at The Biophysical Society Meeting

• 02/01 February 4 is World Cancer Day

• 01/30 Register for VIZBI 2024 (March 13–15)

• 01/30 Notice: NGL Viewer Deprecation

• 01/24 Take the CSM User Survey and Win

• 01/19 Register for the February 13 Mol* Webinar

• 01/18 Undergrads: Spend your summer with RCSB PDB

• 01/16 Register for the February 5 RCSB.org Office Hour

• 01/15 Switch from MMTF to BCIF

• 01/10 Celebrate #NationalMilkDay

• 01/08 wwPDB News: Resources for Supporting the Extended PDB ID Format (pdb_00001abc)

• 01/08 Winter Newsletter Published

• 01/07 Applications Open for Director

• 01/04 Top Molecules of the Month in 2023

• 01/03 wwPDB News: Time-stamped Copies of PDB and EMDB Archives