2ERR

NMR Structure of the RNA Binding Domain of Human Fox-1 in Complex with UGCAUGU


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1mM Fox-1 15N; 1mM UGCAUGU; 20mM sodium phoshphate; 30mM NaCl90% H2O/10% D2O6.51 atm313
23D_13C-separated_NOESY1mM Fox-1 15N, 13C; 1mM UGCAUGU; 20mM sodium phoshphate; 30mM NaCl100% D2O6.51 atm313
33D_15N-separated_NOESY1mM Fox-1 15N; 1mM UGCAUGU; 20mM sodium phoshphate; 30mM NaCl90% H2O/10% D2O6.51 atm313
4HNCA1mM Fox-1 15N, 13C; 1mM UGUAUGU; 20mM sodium phoshphate; 30mM NaCl90% H2O/10% D2O6.51 atm313
5CBCACONH1mM Fox-1 15N, 13C; 1mM UGUAUGU; 20mM sodium phoshphate; 30mM NaCl90% H2O/10% D2O6.51 atm313
6HNCOCA1mM Fox-1 15N, 13C; 1mM UGUAUGU; 20mM sodium phoshphate; 30mM NaCl90% H2O/10% D2O6.51 atm313
7HCCH-TOCSY1mM Fox-1 15N, 13C; 1mM UGCAUGU; 20mM sodium phoshphate; 30mM NaCl100% D2O6.51 atm313
82D F1,F2-edited NOESY1mM Fox-1 15N; 1mM UGCAUGU, sugars of U1, C3, U5 13C; 20mM sodium phoshphate; 30mM NaCl100% D2O6.51 atm313
92D F1-edited, F2-fitered NOESY1mM Fox-1 15N; 1mM UGCAUGU, sugars of U1, C3, U5 13C; 20mM sodium phoshphate; 30mM NaCl100% D2O6.51 atm313
102D F1-edited, F2-fitered NOESY1mM Fox-1 15N; 1mM UGCAUGU, sugars of G2, A4, G6, U7 13C; 20mM sodium phoshphate; 30mM NaCl100% D2O6.51 atm313
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerDRX600
3BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsThe structures are based on a total of 1460 NOE-derived distance constraints, 29 hydrogen bond constraints and 6 torsion angle constraints. 149 and 119 of the NOE constraints are intermolecular and intra-RNA, respectively.CYANA
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number30
Conformers Submitted Total Number30
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA2.0Peter Guentert
2refinementAmber7.0David A. Case