Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOG2784_1ste3l4gA3 A: alpha arraysX: HTHH: HTHT: wingedF: KOG2784_1stECOD (1.6)
AtRNA-synt_2de3l4gA1 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
CKOG2784_likee3l4gC2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: KOG2784_likeECOD (1.6)
CKOG2784_2nde3l4gC3 A: alpha arraysX: HTHH: HTHT: wingedF: KOG2784_2ndECOD (1.6)
CKOG2784_1ste3l4gC1 A: alpha arraysX: HTHH: HTHT: wingedF: KOG2784_1stECOD (1.6)
CtRNA-synt_2de3l4gC4 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
EtRNA-synt_2de3l4gE1 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
GtRNA-synt_2de3l4gG1 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
IKOG2784_1ste3l4gI2 A: alpha arraysX: HTHH: HTHT: wingedF: KOG2784_1stECOD (1.6)
ItRNA-synt_2de3l4gI1 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
KKOG2784_1ste3l4gK2 A: alpha arraysX: HTHH: HTHT: wingedF: KOG2784_1stECOD (1.6)
KtRNA-synt_2de3l4gK1 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
MKOG2784_1ste3l4gM2 A: alpha arraysX: HTHH: HTHT: wingedF: KOG2784_1stECOD (1.6)
MtRNA-synt_2de3l4gM1 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
OtRNA-synt_2de3l4gO1 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2dECOD (1.6)
BB3_4e3l4gB4 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
BB5e3l4gB2 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
BPLN02265e3l4gB12 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
BtRNA-synt_2d_1e3l4gB10 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)
DB3_4e3l4gD15 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
DB5e3l4gD13 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
DPLN02265e3l4gD16 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
DtRNA-synt_2d_1e3l4gD14 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)
HB3_4e3l4gH15 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
HB5e3l4gH13 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
HPLN02265e3l4gH16 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
HtRNA-synt_2d_1e3l4gH14 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)
JB3_4e3l4gJ15 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
JB5e3l4gJ13 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
JPLN02265e3l4gJ16 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
JtRNA-synt_2d_1e3l4gJ14 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)
LB3_4e3l4gL15 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
LB5e3l4gL13 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
LPLN02265e3l4gL16 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
LtRNA-synt_2d_1e3l4gL14 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)
NB3_4e3l4gN15 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
NB5e3l4gN13 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
NPLN02265e3l4gN16 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
NtRNA-synt_2d_1e3l4gN14 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)
PB3_4e3l4gP15 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
PB5e3l4gP13 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
PPLN02265e3l4gP16 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
PtRNA-synt_2d_1e3l4gP14 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)
FB3_4e3l4gF15 A: beta complex topologyX: PheT/TilS domain (From Topology)H: PheT/TilS domain (From Topology)T: PheT/TilS domainF: B3_4ECOD (1.6)
FB5e3l4gF13 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: B5ECOD (1.6)
FPLN02265e3l4gF16 A: alpha arraysX: HTHH: HTHT: Putative DNA-binding domainF: PLN02265ECOD (1.6)
FtRNA-synt_2d_1e3l4gF14 A: a+b three layersX: Class II aaRS and biotin synthetases (From Topology)H: Class II aaRS and biotin synthetases (From Topology)T: Class II aaRS and biotin synthetasesF: tRNA-synt_2d_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
C3.30.1370.240 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
C1.10.10.2320 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
C1.10.10.2330 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
C3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
E3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
G3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
I3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
K3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
M3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
O3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
B3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
B3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
B3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
D3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
D3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
D3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
H3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
H3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
H3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
J3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
J3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
J3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
L3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
L3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
L3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
N3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
N3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
N3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
P3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
P3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
P3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)
F3.30.56.10 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 1CATH (4.3.0)
F3.50.40.10 Alpha Beta 3-Layer(bba) Sandwich Phenylalanyl-tRNA Synthetase Chain B, domain 3CATH (4.3.0)
F3.30.930.10 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G, I
PF18553PheRS DNA binding domain 3 (PheRS_DBD3)PheRS DNA binding domain 3This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the Z-DNA-binding ...This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the Z-DNA-binding domain Zalpha of double-stranded RNA (dsRNA) adenosine deaminase and other domains from DNA-binding proteins. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNAPhe binding and recognition, i.e., from the drastic reduction of aminoacylation activity seen upon removal of the N-terminal domains [1].
Domain
A, C, E, G, I
PF18554PheRS DNA binding domain 2 (PheRS_DBD2)PheRS DNA binding domain 2This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNA- Phe binding and recognition, i.e., from the drastic reduction of aminoacylation a ...This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase N-terminal region. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNA- Phe binding and recognition, i.e., from the drastic reduction of aminoacylation activity seen upon removal of the N-terminal domains. DBD-2 and DBD-3 constitute large insertions sequentially included between two neighboring antiparallel strands of the DBD-1 domain. Moreover, the DBD-3 Pfam:PF18553 is the domain insertion into DBD-2 [1].
Domain
A, C, E, G, I
PF18552PheRS DNA binding domain 1 (PheRS_DBD1)PheRS DNA binding domain 1This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase (EC:6.1.1.20) N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the ...This is a DNA-binding fold domain found in Phenylalanyl-tRNA Synthetase (EC:6.1.1.20) N-terminal region. This domain belongs to a superfamily of 'winged helix' DNA-biding domains. The topology of DBD-1 and DBD-3 closely resembles the topology of the Z-DNA-binding domain Zalpha of double-stranded RNA (dsRNA) adenosine deaminase and other domains from DNA-binding proteins. Mutational analysis indicate that DBD-1, 2 and 3 play critical roles in tRNA-Phe binding and recognition, i.e., from the drastic reduction of aminoacylation activity seen upon removal of the N-terminal domains [1].
Domain
A, C, E, G, I
PF01409tRNA synthetases class II core domain (F) (tRNA-synt_2d)tRNA synthetases class II core domain (F)Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.Domain
B, D, F, H, J
PF18262Phe-tRNA synthetase beta subunit B1 domain (PhetRS_B1)Phe-tRNA synthetase beta subunit B1 domainThis is the N-terminal domain found in human cytosolic phenylalanyl tRNA synthetase beta subunit [1].Domain
B, D, F, H, J
PF03483B3/4 domain (B3_4)B3/4 domainThis domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.Domain
B, D, F, H, J
PF03484tRNA synthetase B5 domain (B5)tRNA synthetase B5 domainThis domain is found in phenylalanine-tRNA synthetase beta subunits.Domain
B, D, F, H, J
PF17759Phenylalanyl tRNA synthetase beta chain CLM domain (tRNA_synthFbeta)Phenylalanyl tRNA synthetase beta chain CLM domainThis domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, I
Phenylalanyl-tRNA synthetase alpha chain
B, D, F, H, J
Phenylalanyl-tRNA synthetase beta chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C, E, G, I
IPR040586PheRS DNA binding domain 2Domain
A, C, E, G, I
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Homologous Superfamily
A, C, E, G, I
IPR002319Phenylalanyl-tRNA synthetaseDomain
A, C, E, G, I
IPR040724PheRS, DNA binding domain 1Domain
A, C, E, G, I
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A, C, E, G, I
IPR004529Phenylalanyl-tRNA synthetase, class IIc, alpha subunitFamily
A, C, E, G, I
IPR006195Aminoacyl-tRNA synthetase, class IIDomain
A, C, E, G, I
IPR040725PheRS, DNA binding domain 3Domain
B, D, F, H, J
IPR009061Putative DNA-binding domain superfamilyHomologous Superfamily
B, D, F, H, J
IPR045060Phenylalanine-tRNA ligase, class IIc, beta subunitFamily
B, D, F, H, J
IPR020825Phenylalanyl-tRNA synthetase-like, B3/B4Homologous Superfamily
B, D, F, H, J
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Homologous Superfamily
B, D, F, H, J
IPR004531Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archaeal/eukaryotic typeFamily
B, D, F, H, J
IPR005147tRNA synthetase, B5-domainDomain
B, D, F, H, J
IPR005146B3/B4 tRNA-binding domainDomain
B, D, F, H, J
IPR041616Phenylalanyl tRNA synthetase beta chain, core domainDomain
B, D, F, H, J
IPR040659Phenylalanine--tRNA ligase beta subunit, B1 domainDomain