3J26

The 3.5 A resolution structure of the Sputnik virophage by cryo-EM


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF21915e3j26A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
APF22031e3j26A2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
BPF21915e3j26B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
BPF22031e3j26B2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
CPF21915e3j26C2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
CPF22031e3j26C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
DPF21915e3j26D2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
DPF22031e3j26D1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
EPF21915e3j26E1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
EPF22031e3j26E2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
FPF21915e3j26F1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
FPF22031e3j26F2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
GPF21915e3j26G2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
GPF22031e3j26G1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
HPF21915e3j26H1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
HPF22031e3j26H2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
IPF21915e3j26I2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
IPF22031e3j26I1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
JPF21915e3j26J1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
JPF22031e3j26J2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
KPF21915e3j26K1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
KPF22031e3j26K2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
LPF21915e3j26L2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
LPF22031e3j26L1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
MPF21915e3j26M1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF21915ECOD (1.6)
MPF22031e3j26M2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22031ECOD (1.6)
NF_UNCLASSIFIEDe3j26N1 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in minor capsid protein (From Topology)T: Jelly-roll domain in minor capsid proteinF: F_UNCLASSIFIEDECOD (1.6)
NPF21507e3j26N2 A: a+b complex topologyX: Insertion domain of minor capsid protein (From Topology)H: Insertion domain of minor capsid protein (From Topology)T: Insertion domain of minor capsid proteinF: PF21507ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
N2.60.120.1100 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21507Sputnik minor capsid protein V18/19 (V18-19)Sputnik minor capsid protein V18/19This entry includes Sputnik virus minor capsid proteins, such V19. Sputnik is a dsDNA virus, referred to as a virophage, that is coassembled with Mimivirus in the host amoeba [1]. It is an icosahedral virus and its capsid contains a major protein (V ...This entry includes Sputnik virus minor capsid proteins, such V19. Sputnik is a dsDNA virus, referred to as a virophage, that is coassembled with Mimivirus in the host amoeba [1]. It is an icosahedral virus and its capsid contains a major protein (V20) and two minor proteins (V18/19). Proteins in this entry have a single jelly-roll structure [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
capsid protein V20- -
Minor virion protein- - -