6NUW

Yeast Ctf19 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structure of the Ctf19c/CCAN from budding yeast.

Hinshaw, S.M.Harrison, S.C.

(2019) Elife 8

  • DOI: https://doi.org/10.7554/eLife.44239
  • Primary Citation of Related Structures:  
    6NUW

  • PubMed Abstract: 

    Eukaryotic kinetochores connect spindlemicrotubules to chromosomal centromeres. A group of proteins called the Ctf19 complex (Ctf19c) in yeast and the constitutive centromere associated network (CCAN) in other organisms creates the foundation of a kinetochore. The Ctf19c/CCAN influences the timing of kinetochore assembly, sets its location by associating with a specialized nucleosome containing the histone H3 variant Cse4/CENP-A, and determines the organization of the microtubule attachment apparatus. We present here the structure of a reconstituted 13-subunit Ctf19c determined by cryo-electron microscopy at ~4 Å resolution. The structure accounts for known and inferred contacts with the Cse4 nucleosome and for an observed assembly hierarchy. We describe its implications for establishment of kinetochores and for their regulation by kinases throughout the cell cycle.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Howard Hughes Medical Institute, Boston, United States.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit IML3A [auth B]248Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: IML3MCM19YBR107CYBR0836
UniProt
Find proteins for P38265 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP38265
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit MCM21B [auth C]371Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MCM21CTF5YDR318W
UniProt
Find proteins for Q06675 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ06675
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit CTF19C [auth D]369Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: CTF19MCM18YPL018WLPB13W
UniProt
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UniProt GroupQ02732
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit CHL4D [auth E]461Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: CHL4CTF17MCM17YDR254WYD9320A.04
UniProt
Find proteins for P38907 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP38907
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit OKP1E [auth F]406Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: OKP1YGR179C
UniProt
Find proteins for P53298 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP53298
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit NKP1F [auth G]241Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NKP1YDR383C
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit AME1G [auth I]330Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: AME1ARP100YBR211CYBR1458
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit CTF3,Inner kinetochore subunit CTF3H,
J [auth Y]
773Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: CTF3CHL3YLR381W
UniProt
Find proteins for Q12748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit NKP2I [auth J]153Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NKP2YLR315W
UniProt
Find proteins for Q06162 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ06162
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit Mcm22K [auth X]126Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Inner kinetochore subunit Mcm16L [auth M]75Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown (unassigned)M [auth U]23Saccharomyces cerevisiae S288CMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTPHENIX1.13

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-03
    Type: Initial release
  • Version 1.1: 2019-11-20
    Changes: Author supporting evidence
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references