6CO8
Structure of Zika virus at a resolution of 3.1 Angstrom
- PDB DOI: https://doi.org/10.2210/pdb6CO8/pdb
- EM Map EMD-7543: EMDB EMDataResource
- Classification: VIRUS
- Organism(s): Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
- Mutation(s): No
- Membrane Protein: Yes OPM
- Deposited: 2018-03-12 Released: 2018-07-04
- Funding Organization(s): National Institutes of Health/National Center for Research Resources (NIH/NCRR), National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.10 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| E protein | 504 | Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013 | Mutation(s): 0 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for A0A024B7W1 (Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013)) Explore A0A024B7W1 Go to UniProtKB: A0A024B7W1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A024B7W1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| M protein | 75 | Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013 | Mutation(s): 0 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for A0A024B7W1 (Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013)) Explore A0A024B7W1 Go to UniProtKB: A0A024B7W1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A024B7W1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.10 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
| RECONSTRUCTION | jspr |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-07-04 Deposition Author(s): Sevvana, M., Long, F., Miller, A.J., Klose, T., Buda, G., Sun, L., Kuhn, R.J., Rossmann, M.R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Center for Research Resources (NIH/NCRR) | United States | AI076331 |
| National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) | United States | AI073755 |
Revision History (Full details and data files)
- Version 1.0: 2018-07-04
Type: Initial release - Version 1.1: 2018-07-11
Changes: Data collection, Database references, Source and taxonomy - Version 1.2: 2018-09-19
Changes: Data collection, Database references - Version 1.3: 2019-12-04
Changes: Author supporting evidence - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary
