5T4O

Autoinhibited E. coli ATP synthase state 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Cryo-EM structures of the autoinhibitedE. coliATP synthase in three rotational states.

Sobti, M.Smits, C.Wong, A.S.Ishmukhametov, R.Stock, D.Sandin, S.Stewart, A.G.

(2016) Elife 5

  • DOI: https://doi.org/10.7554/eLife.21598
  • Primary Citation of Related Structures:  
    5T4O, 5T4P, 5T4Q

  • PubMed Abstract: 

    A molecular model that provides a framework for interpreting the wealth of functional information obtained on the E. coli F-ATP synthase has been generated using cryo-electron microscopy. Three different states that relate to rotation of the enzyme were observed, with the central stalk's ε subunit in an extended autoinhibitory conformation in all three states. The F o motor comprises of seven transmembrane helices and a decameric c-ring and invaginations on either side of the membrane indicate the entry and exit channels for protons. The proton translocating subunit contains near parallel helices inclined by ~30° to the membrane, a feature now synonymous with rotary ATPases. For the first time in this rotary ATPase subtype, the peripheral stalk is resolved over its entire length of the complex, revealing the F 1 attachment points and a coiled-coil that bifurcates toward the membrane with its helices separating to embrace subunit a from two sides.


  • Organizational Affiliation

    Molecular, Structural and Computational Biology Division, The Victor Chang Cardiac Research Institute, Darlinghurst, Australia.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit alpha
A, B, C
513Escherichia coliMutation(s): 0 
Gene Names: atpAECS88_4156
EC: 3.6.3.14
Membrane Entity: Yes 
UniProt
Find proteins for P0ABB0 (Escherichia coli (strain K12))
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UniProt GroupP0ABB0
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit beta
D, E, F
471Escherichia coliMutation(s): 0 
Gene Names: atpDECS88_4154
EC: 3.6.3.14
Membrane Entity: Yes 
UniProt
Find proteins for P0ABB4 (Escherichia coli (strain K12))
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UniProt GroupP0ABB4
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase gamma chain287Escherichia coliMutation(s): 0 
Gene Names: atpGECS88_4155
Membrane Entity: Yes 
UniProt
Find proteins for P0ABA6 (Escherichia coli (strain K12))
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UniProt GroupP0ABA6
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase epsilon chain139Escherichia coliMutation(s): 0 
Gene Names: atpCECS88_4153
Membrane Entity: Yes 
UniProt
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UniProt GroupP0A6E6
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit b
I, J
155Escherichia coliMutation(s): 0 
Gene Names: atpFZ5234ECs4678
Membrane Entity: Yes 
UniProt
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UniProt GroupP0ABA0
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit a271Escherichia coliMutation(s): 0 
Gene Names: atpBEC55989_4213
Membrane Entity: Yes 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit delta177Escherichia coliMutation(s): 0 
Gene Names: atpHECS88_4157
Membrane Entity: Yes 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit c
M, N, O, P, Q
M, N, O, P, Q, R, S, T, U, V
79Escherichia coliMutation(s): 0 
Gene Names: atpEECIAI39_4341
Membrane Entity: Yes 
UniProt
Find proteins for P68699 (Escherichia coli (strain K12))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-12-28
    Type: Initial release
  • Version 1.1: 2017-01-04
    Changes: Database references
  • Version 1.2: 2018-03-28
    Changes: Data collection, Database references
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references