5IRE
The cryo-EM structure of Zika Virus
- PDB DOI: https://doi.org/10.2210/pdb5IRE/pdb
- EM Map EMD-8116: EMDB EMDataResource
- Classification: VIRUS
- Organism(s): Zika virus
- Mutation(s): No 
- Membrane Protein: Yes  OPM
- Deposited: 2016-03-13 Released: 2016-03-30 
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.80 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
E protein | 504 | Zika virus | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for A0A024B7W1 (Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013)) Explore A0A024B7W1  Go to UniProtKB:  A0A024B7W1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A024B7W1 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
M protein | 75 | Zika virus | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for A0A024B7W1 (Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013)) Explore A0A024B7W1  Go to UniProtKB:  A0A024B7W1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A024B7W1 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.80 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.10.1-2155 |
RECONSTRUCTION | jspr | 2015 |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-03-30  Deposition Author(s): Sirohi, D., Chen, Z., Sun, L., Klose, T., Pierson, T., Rossmann, M., Kuhn, R.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01AI073755 |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01AI07633 |
Revision History (Full details and data files)
- Version 1.0: 2016-03-30
Type: Initial release - Version 1.1: 2016-04-06
Changes: Other - Version 1.2: 2016-05-04
Changes: Derived calculations - Version 1.3: 2017-09-13
Changes: Author supporting evidence, Data collection - Version 1.4: 2018-07-18
Changes: Data collection - Version 1.5: 2019-12-11
Changes: Author supporting evidence, Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary