5BR0
Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1)
- PDB DOI: https://doi.org/10.2210/pdb5BR0/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus
- Expression System: unidentified baculovirus
- Mutation(s): No 
- Deposited: 2015-05-29 Released: 2015-08-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.210 
- R-Value Work: 0.182 
- R-Value Observed: 0.184 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HEMAGGLUTININ HA1 CHAIN | 326 | Influenza A virus | Mutation(s): 0  Gene Names: HA | ||
UniProt | |||||
Find proteins for A0A0M3KL64 (Influenza A virus) Explore A0A0M3KL64  Go to UniProtKB:  A0A0M3KL64 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0M3KL64 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HEMAGGLUTININ HA2 CHAIN | 171 | Influenza A virus | Mutation(s): 0  Gene Names: HA | ||
UniProt | |||||
Find proteins for A0A0M3KL65 (Influenza A virus) Explore A0A0M3KL65  Go to UniProtKB:  A0A0M3KL65 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0M3KL65 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | E, F | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G43648DB GlyCosmos:  G43648DB GlyGen:  G43648DB |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | G [auth A] H [auth A] I [auth A] J [auth A] K [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.39 Å
- R-Value Free: 0.210 
- R-Value Work: 0.182 
- R-Value Observed: 0.184 
- Space Group: P 3
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 114.02 | α = 90 |
b = 114.02 | β = 90 |
c = 164.44 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
MOSFLM | data reduction |
SCALA | data scaling |
PHENIX | phasing |
Entry History 
Deposition Data
- Released Date: 2015-08-12  Deposition Author(s): Ni, F., Kondrashkina, E., Wang, Q.
Revision History (Full details and data files)
- Version 1.0: 2015-08-12
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary