4BJ0
Xyloglucan binding module (CBM4-2 X2-L110F) in complex with branched xyloses
- PDB DOI: https://doi.org/10.2210/pdb4BJ0/pdb
- Classification: HYDROLASE
- Organism(s): Rhodothermus marinus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2013-04-15 Released: 2014-04-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.129
- R-Value Work: 0.114
- R-Value Observed: 0.115
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| XYLANASE | 176 | Rhodothermus marinus | Mutation(s): 7 EC: 3.2.1.8 |  | |
UniProt | |||||
Find proteins for Q6V8M0 (Rhodothermus marinus) Explore Q6V8M0 Go to UniProtKB: Q6V8M0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6V8M0 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | B | 7 |  | N/A | |
Glycosylation Resources | |||||
GlyTouCan: G24181CY GlyCosmos: G24181CY | |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GLC Query on GLC | D [auth A] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.129
- R-Value Work: 0.114
- R-Value Observed: 0.115
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.78 | α = 90 |
| b = 48.79 | β = 90 |
| c = 44.22 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2014-04-23 Deposition Author(s): Schantz, L., Hakansson, M., Logan, D.T., Nordberg-Karlsson, E., Ohlin, M.
Revision History (Full details and data files)
- Version 1.0: 2014-04-23
Type: Initial release - Version 1.1: 2014-10-29
Changes: Database references - Version 1.2: 2014-12-03
Changes: Database references - Version 1.3: 2018-01-17
Changes: Data collection, Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary
