6GYS
Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Cep3/Upc2 domain-like | 8093129 | 3002679 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ARM repeat-like | 8093131 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cep3/Upc2 domain-like | 8093129 | 3002679 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ARM repeat-like | 8093131 | 3000116 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Cep3/Upc2 domain-like | 8093129 | 3002679 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | ARM repeat-like | 8093131 | 3000116 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | ARM repeat-like | 8093131 | 3000116 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Cep3/Upc2 domain-like | 8093129 | 3002679 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8043773 | 3000564 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8043773 | 3000564 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | lambda integrase clamp domain-like | 8053778 | 3000550 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8053766 | 3001127 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8053766 | 3001127 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | lambda integrase clamp domain-like | 8053778 | 3000550 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF16846 | e6gysB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF16846 | ECOD (1.6) |
B | PF00172 | e6gysB2 | A: few secondary structure elements | X: Zn2/Cys6 DNA-binding domain (From Topology) | H: Zn2/Cys6 DNA-binding domain (From Topology) | T: Zn2/Cys6 DNA-binding domain | F: PF00172 | ECOD (1.6) |
C | PF16846 | e6gysC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF16846 | ECOD (1.6) |
C | PF00172 | e6gysC2 | A: few secondary structure elements | X: Zn2/Cys6 DNA-binding domain (From Topology) | H: Zn2/Cys6 DNA-binding domain (From Topology) | T: Zn2/Cys6 DNA-binding domain | F: PF00172 | ECOD (1.6) |
I | PF16846 | e6gysI2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF16846 | ECOD (1.6) |
I | PF00172 | e6gysI1 | A: few secondary structure elements | X: Zn2/Cys6 DNA-binding domain (From Topology) | H: Zn2/Cys6 DNA-binding domain (From Topology) | T: Zn2/Cys6 DNA-binding domain | F: PF00172 | ECOD (1.6) |
J | PF16846 | e6gysJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF16846 | ECOD (1.6) |
J | PF00172 | e6gysJ2 | A: few secondary structure elements | X: Zn2/Cys6 DNA-binding domain (From Topology) | H: Zn2/Cys6 DNA-binding domain (From Topology) | T: Zn2/Cys6 DNA-binding domain | F: PF00172 | ECOD (1.6) |
D | PF01466,PF03931 | e6gysD1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF01466,PF03931 | ECOD (1.6) |
K | PF01466,PF03931 | e6gysK1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF01466,PF03931 | ECOD (1.6) |
E | PF16787 | e6gysE1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: PF16787 | ECOD (1.6) |
E | PF21400 | e6gysE3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: PF21400 | ECOD (1.6) |
L | PF16787 | e6gysL1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: PF16787 | ECOD (1.6) |
L | PF21400 | e6gysL2 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: PF21400 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00172 | Fungal Zn(2)-Cys(6) binuclear cluster domain (Zn_clus) | Fungal Zn(2)-Cys(6) binuclear cluster domain | - | Domain | |
PF16846 | Centromere DNA-binding protein complex CBF3 subunit B (Cep3) | Centromere DNA-binding protein complex CBF3 subunit B | - | Family | |
PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain | |
PF21400 | Ndc10 N-terminal domain (Ndc10_N) | Ndc10 N-terminal domain | Kinetochores link centromeric DNA to spindle microtubules and ensure faithful chromosome segregation during mitosis. In point-centromere yeasts, the CBF3 complex Skp1-Ctf13-(Cep3)(2)-(Ndc10)recognizes a conserved centromeric DNA element through conta ... | Domain | |
PF16787 | Centromere DNA-binding protein complex CBF3 subunit, domain 2 (NDC10_II) | Centromere DNA-binding protein complex CBF3 subunit, domain 2 | NDC10_II is a the second of five domains on the Kluyveromyces lactis Ndc10 protein. Each subunit of the Ndc10 dimer binds a separate fragment of DNA, suggesting that Ndc10 stabilises a DNA loop at the centromere [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR036864 | Zn(2)-C6 fungal-type DNA-binding domain superfamily | Homologous Superfamily | |
IPR031760 | Centromere DNA-binding protein complex CBF3 subunit B, C-terminal | Domain | |
IPR001138 | Zn(2)Cys(6) fungal-type DNA-binding domain | Domain | |
IPR016073 | SKP1 component, POZ domain | Domain | |
IPR001232 | S-phase kinase-associated protein 1-like | Family | |
IPR036296 | SKP1-like, dimerisation domain superfamily | Homologous Superfamily | |
IPR016072 | SKP1 component, dimerisation | Domain | |
IPR011333 | SKP1/BTB/POZ domain superfamily | Homologous Superfamily | |
IPR016897 | S-phase kinase-associated protein 1 | Family | |
IPR022210 | Transcription activator GCR1-like domain | Domain | |
IPR049055 | NDC10, N-terminal domain | Domain | |
IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily | |
IPR038279 | Ndc10, domain 2 superfamily | Homologous Superfamily | |
IPR031872 | Ndc10, domain 2 | Domain |